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Publications


2009

Alontaga, A., Rodriguez, J., Schönbrunn, E., Becker, A., Funke, T., Yukl, E., Hayashi, T., Stobaugh, J., Moënne-Loccoz, P., and Rivera, M., Structural Characterization of the Hemophore HasAp from Pseudomonas aeruginosa: NMR Spectroscopy Reveals Protein#Protein Interactions between Holo-HasAp and Hemoglobin, Biochemistry, (2009), 48 (1), 96-109.

Desaire H, Hua, D. When can glycopeptides be assigned based solely on high resolution mass data? Int. J. Mass Spec. (2009), In Press. Invited submission.

Livanec, Philip W., Huckabay, Heath A., and Dunn, Robert C. Exploring the Effects of Sterols in Model Lipid Membranes Using Single-Molecule Orientations. J. Phys. Chem. B. 2009, 113, 10240-10248.

Liyanage, M.R,; Zaidi, A.; Johnson, C.K.; Fluorescence polarization assay for calmodulin binding to plasma membrane Ca2+-ATPase: Dependence on enzyme and Ca2+ concentrations. Analytical Biochemistry 385 (2009) 1-6.

Rebecchi, KR, Wenke JL, Go EP, Desaire H. Label-Free Quantitation: A new glycoproteomics approach. J. Am. Soc. Mass Spectrom. (2009), In Press.

Rivera, M. and Rodriguez, J.C., The Dual Role of Heme as Cofactor and Substrate in the Biosynthesis of Carbon Monoxide, Met. Ions Life Sci. (2009), 6, 241-293.

Toumi ML, Go EP, Desaire H. Development of fully functional proteins with novel glycosylation via enzymatic glycan trimming. J. Pharm. Sci. (2009), 98, 2581-2591.

Weeratunga, S.K., Gee, C.E., Lovell, S., Zeng, Y., Woodin, C.L. and Rivera, M. J., Binding of Pseudomonas aeruginosa Apobacterioferritin-Associated Ferredoxin to Bacterioferritin B Promotes Heme Mediation of Electron Delivery and Mobilization of Core Mineral Iron, Biochemistry (2009), 48, 7420–7431.


2008

Bousfield GR, Butnev VY, Bidart J-M, Dalpathado DS, Irungu J, Desaire H. Chromatofocusing fails to separate hFSH isoforms on the basis of glycan structure. Biochemistry, (2008), 47(6), 1708-1720.

Go, EP, Irungu J, Zhang Y, Dalpathado DS, Liao H-X, Sutherland LL, Alam SM, Haynes BF, Desaire H. Glycosylation Site-Specific Analysis of HIV Envelope Proteins (JR-FL and CON-S) Reveals Major Differences in Glycosylation Site Occupancy, Glycoform Profiles, and Antigenic Epitopes’ Accessibility. J. Proteome Resch. (2008), 7(4), 1660-1674, Highlighted with a news feature in the journal. “Sweet Designs for an HIV vaccine” J. Proteome Resch.(2008), 7(4), 1372..

Dalpathado DS, Desaire H. Glycopeptide analysis by mass sepectrometry. Analyst 133, 731-738, (2008). Invited review article –Top 10 most accessed in June, 2008.

Fogarty, Barbara A.; Nandi, Pradyot; Lunte, Susan M.. Microdialysis and microchip systems. Editor(s): Landers, James P. Handbook of Capillary and Microchip Electrophoresis and Associated Microtechniques (3rd Edition) (2008), 1327-1340. Publisher: CRC Press LLC, Boca Raton, Fla

Holovics, H. J.; Anderson, C. R.; Levine, B. S.; Lunte, C, .Investigation of drug delivery by iontophoresis in a surgical wound utilizing microdialysis. Pharmaceutical Research (2008), 25(8), 1762-1770.[abstract]

Irungu J, Go EP, Zhang Y, Dalpathado DS, Liao HX, Haynes BF. Desaire H. Comparison of LC/ESI-FTICR MS vs MALDI-TOF/TOF MS for glycopeptide analysis of a highly glycosylated protein: HIV Envelope glycoprotein. J. Am. Soc. Mass Spectrom. (2008), 19, 1209-1220.

Li, Xiaobao; Pennington, Justin; Stobaugh, John F.; Schoeneich, Christian. Synthesis of sulfonamide- and sulfonyl-phenylboronic acid-modified silica phases for boronate affinity chromatography at physiological pH. Analytical Biochemistry (2008), 372(2), 227-236.

Livanec, Philip W., Dunn, Robert C.. Single-Molecule Probes of Lipid Membrane Structure. Langmuir (2008), 24 (24), 14066-14073.

Price, K. E.; Lunte, C. E.; Larive, C. K., Development of tissue-targeted metabonomics. Part 1. Analytical considerations. Journal of Pharmaceutical and Biomedical Analysis (2008), 46(4), 737-747.[abstract]

Toriyama, M., Maher, Tiffany R., Holovics, Thomas  C., Vanka, Kumar, Day, Victor W., Berrie, Cindy L., Thompson, Ward H. and Barybin, Mikhail V., Multipoint Anchoring of the [2.2.2.2]Metacyclophane Motif to a Gold Surface via Self-Assembly: Coordination Chemistry of a Cyclic Tetraisocyanide Revisited, Inorganic Chemistry, (2008), 47, 3284-3291.

Wang, A., Rodríguez, J. C., Han, H., Schönbrunn, E., and Rivera, M. J., X-ray Crystallographic and Solution State Nuclear Magnetic Resonance Spectroscopic Investigations of NADP+ Binding to Ferredoxin NADP Reductase from Pseudomonas aeruginosa, Biochemistry, (2008), 47, 8080–8093.

Whitaker, Gillian; Lillquist, Amy; Pasas, Stephanie A.; O'Connor, Robert; Regan, Fiona; Lunte, Craig E.; Smyth, Malcolm R., CE-LIF method for the separation of anthracyclines: application to protein binding analysis in plasma using ultrafiltration. Journal of Separation Science (2008), 31(10), 1828-1833. [abstract]

Woo, Kristin L.; Lunte, Craig E., The development of multiple probe microdialysis sampling in the stomach. Journal of Pharmaceutical and Biomedical Analysis (2008), 48(1), 20-26. [abstract]

Woo, Kristin L.; Lunte, Craig E,. The direct comparison of health and ulcerated stomach tissue: A multiple probe microdialysis sampling approach. Journal of Pharmaceutical and Biomedical Analysis. Journal of Pharmaceutical and Biomedical Analysis (2008), 48(1), 85-91. [abstract]

Zhang Y, Go EP, Desaire H. Maximizing coverage of glycosylation heterogeneity in MALDI-MS analysis of glycoproteins with up to 27 glycosylation sites. Anal. Chem. (2008), 80(9), 3144-3158.


2007

Arnett, Stacy D.; Lunte, Craig E.. Enhanced pH-mediated stacking of anions for CE incorporating a dynamic pH junction. Electrophoresis (2007), 28(20), 3786-3793.

Chappa, Arvind K.; Cooper, Joshua D.; Audus, Kenneth L.; Lunte, Susan M.. Investigation of the metabolism of substance P at the blood-brain barrier using LC-MS/MS. Journal of Pharmaceutical and Biomedical Analysis (2007), 43(4), 1409-1415.

Chaurasia, Chandra S.; Muller, Markus; Bashaw, Edward D.; Benfeldt, Eva; Bolinder, Jan; Bullock, Ross; Bungay, Peter M.; DeLange, Elizabeth C. M.; Derendorf, Hartmut; Elmquist, William F.; Hammarlund-Udenaes, Margareta; Joukhadar, Christian; Kellogg, Dean L., Jr.; Lunte, Craig E.; Nordstrom, Carl Henrik; Rollema, Hans; Sawchuk, Ronald J.; Cheung, Belinda W. Y.; Shah, Vinod P.; Stahle, Lars; Ungerstedt, Urban; Welty, Devin F.; Yeo, Helen. AAPS-FDA workshop white paper: Microdialysis principles, application, and regulatory perspectives. Journal of Clinical Pharmacology (2007), 47(5), 589-603.

Chaurasia, Chandra S.; Mueller, Markus; Bashaw, Edward D.; Benfeldt, Eva; Bolinder, Jan; Bullock, Ross; Bungay, Peter M.; DeLange, Elizabeth C. M.; Derendorf, Hartmut; Elmquist, William F.; Hammarlund-Udenaes, Margareta; Joukhadar, Christian; Kellogg, Dean L., Jr.; Lunte, Craig E.; Nordstrom, Carl Henrik; Rollema, Hans; Sawchuk, Ronald J.; Cheung, Belinda W. Y.; Shah, Vinod P.; Stahle, Lars; Ungerstedt, Urban; Welty, Devin F.; Yeo, Helen. AAPS-FDA Workshop White Paper: Microdialysis Principles, Application and Regulatory Perspectives. Pharmaceutical Research (2007), 24(5), 1014-1025.

Cooper, Joshua D.; Heppert, Kathleen E.; Davies, Malonne I.; Lunte, Susan M.. Evaluation of an osmotic pump for microdialysis sampling in an awake and untethered rat. Journal of Neuroscience Methods (2007), 160(2), 269-275.

Crick, Eric W.; Osorio, Ivan; Bhavaraju, Naresh C.; Linz, Thomas H.; Lunte, Craig E.. An investigation into the pharmacokinetics of 3-mercaptopropionic acid and development of a steady-state chemical seizure model using in vivo microdialysis and electrophysiological monitoring. Epilepsy Research (2007), 74(2-3), 116-125.

Cruzado-Park ID, Alam M, Liao HX, Haynes B, Desaire H, Rabelli E, Coulter B, D'Costa S, Simonian MH, Ratnayake CK. Carbohydrate analysis of HIV envelope glycoprotein. Clinical Immunol. (2007), 123, S38-S38.

Dalpathado, Dilusha S.; Chang, Qing; Burkett, Colleen M.; Bandu, Mary L.; Desaire, Heather. Application of the statistical test of equivalent pathways (STEP) method to the triple quadrupole mass spectrometer. Rapid Communications in Mass Spectrometry (2007), 21(20), 3365-3372.

Dickenson, Nicholas E.; Erickson, Elizabeth S.; Mooren, Olivia L.; Dunn, Robert C.. Characterization of power induced heating and damage in fiber optic probes for near-field scanning optical microscopy. Review of Scientific Instruments (2007), 78(5), 053712/1-053712/6.

Dickenson, Nicholas E.; Moore, David; Suprenant, Kathy A.; Dunn, Robert C.. Vault ribonucleoprotein particles and the central mass of the nuclear pore complex. Photochemistry and Photobiology (2007), 83(3), 686-691.

Frankenfeld, C. and Lunte, S.M., Pharmaceutical Analysis using BioMEMS, in Bio-MEMS Devices and Systems, W. Wang and S.Soper (editors), CRC Press, (2007) 443-465

Gilinskii, M. A.; Lunte, C. E., Norepinephrine of the rat myocardium during repeated ischemia. Ross Fiziol Zh Im I M Sechenova (2007), 93(8), 860-860. Russian. [abstract]

Go, Eden P.; Rebecchi, Kathryn R.; Dalpathado, Dilusha S.; Bandu, Mary L.; Zhang, Ying; Desaire, Heather. GlycoPep DB: A Tool for Glycopeptide Analysis Using a "Smart Search". Analytical Chemistry (2007), 79(4), 1708-1713.

He, Feng; Samra, Hardeep S.; Tucker, Ward C.; Mayans, David R.; Hoang, Etter; Gromet-Elhanan, Zippora; Berrie, Cindy L.; Richter, Mark L. Mutations within the C-Terminus of the  Subunit of the Photosynthetic F1-ATPase Activate MgATP Hydrolysis and Attenuate the Stimulatory Oxyanion Effect. Biochemistry (2007), 46(9), 2411-2418.

Johnson, M. A., Villanueva, M., Haynes, C. L., Seipel, A. T, Buhler, L. A., and Wightman, R. M., Catecholamine exocytosis is diminished in the R6/2 mouse model of Huntington’s disease, J. Neurochem., 2007, 103(5), 2102-2110.

Mitchell, Jennifer L.; Trible, Ronald P.; Emert-Sedlak, Lori A.; Weis, David D.; Lerner, Edwina C.; Applen, Jeremy J.; Sefton, Bartholomew M.; Smithgall, Thomas E.; Engen, John R. Functional Characterization and Conformational Analysis of the Herpesvirus saimiri Tip-C484 Protein. Journal of Molecular Biology (2007), 366(4), 1282-1293.

Pennington, Justin P.; Schoneich, Christian; Stobaugh, John F.. Selective fluorogenic derivatization with isotopic coding of catechols and 2-amino phenols with benzylamine: a chemical basis for the relative determination of 3-hydroxy-tyrosine and 3-nitro-tyrosine peptides. Chromatographia (2007), 66(9/10), 649-659.

Priddy, Timothy S.; Price, E. Shane; Johnson, Carey K.; Carlson, Gerald M. Single molecule analyses of the conformational substates of calmodulin bound to the phosphorylase kinase complex. Protein Science (2007), 16(6), 1017-1023.

Rodriguez, J.C., Zeng, Y., Wilks, A., and Rivera, M., The Hydrogen-Bonding Network in Heme Oxygenase Also Functions as a Modulator of Enzyme Dynamics: Chaotic Motions upon Disrupting the H-Bond Network in Heme Oxygenase from Pseudomonas aeruginosa, Journal Am. Chem. Soc. (2007), 129, 11730-11742.

Slaughter, Brian D.; Bieber Urbauer, Ramona J.; Urbauer, Jeffrey L.; Johnson, Carey K.. Mechanism of Calmodulin Recognition of the Binding Domain of Isoform 1b of the Plasma Membrane Ca2+-ATPase: Kinetic Pathway and Effects of Methionine Oxidation. Biochemistry (2007), 46(13), 4045-4054.

Unruh, Jay R.; Liyanage, Mangala Roshan; Johnson, Carey K.. Tyrosyl Rotamer Interconversion Rates and the Fluorescence Decays of N-Acetyltyrosinamide and Short Tyrosyl Peptides. Journal of Physical Chemistry B (2007), 111(19), 5494-5502.

Wang, A. , Zeng, Y., Han, H., Weeratunga, S., Morgan, B. Moënne-Loccoz, P., Schönbrunn, E., and Rivera, M. J., Biochemical and Structural Characterization of Pseudomonas aeruginosa Bfd and FPR: Ferredoxin NADP+ Reductase and Not Ferredoxin Is the Redox Partner of Heme Oxygenase under Iron-Starvation Conditions, Biochemistry (2007), 46, 12198-12211.

Weis, David D.; Kaveti, Suma; Wu, Yan; Engen, John R. Probing protein interactions using hydrogen-deuterium exchange mass spectrometry. Mass Spectrometry of Protein Interactions (2007), 45-61.

Wilson, George S.; Ammam, Malika. In vivo biosensors. FEBS Journal (2007), 274(21), 5452-5461.


2006

Alontaga, A. Y., Bunce, R. A., Wilks, A ., & Rivera, 13C NMR Spectroscopy of Core Heme Carbons as a Simple Tool to Elucidate the Coordination State of Ferric High-Spin Heme Proteins, M Inorg. Chem., (2006), 45(22), 8876-8881.

Bandu, Mary L.; Desaire, Heather. The STEP method (statistical test of equivalent pathways): application to pharmaceuticals. Analyst (2006), 131(2), 268-274.

Bandu, Mary L.; Grubbs, Thomas; Kater, Marcus; Desaire, Heather. Collision induced dissociation of alpha hydroxy acids: Evidence of an ion-neutral complex intermediate. International Journal of Mass Spectrometry (2006), 251(1), 40-46.

Chappa, Arvind K.; Audus, Kenneth L.; Lunte, Susan M.. Characteristics of Substance P Transport Across the Blood-Brain Barrier. Pharmaceutical Research (2006), 23(6), 1201-1208.

Chappa, A.K., Desino, K.E., Lunte, S.M. and Audus, K.L., Functional Aspects of Vasoactive Peptides at the Blood-Brain Barrier, Handbook of Biologically Active Peptides, Abba Kastin (editor), (2006), 204, 1479-1486

Cheng, Q., Benson, D. R., Rivera, M., & Kuczera, K., Influence of point mutations on the flexibility of cytochrome b5: molecular dynamics simulations of holoproteins, Biopolymers, (2006), 83(3), 297-312.

Dalpathado, Dilusha S.; Irungu, Janet; Go, Eden P.; Butnev, Vladimir Y.; Norton, Katie; Bousfield, George R.; Desaire, Heather. Comparative Glycomics of the Glycoprotein Follicle Stimulating Hormone: Glycopeptide Analysis of Isolates from Two Mammalian Species. Biochemistry (2006), 45(28), 8665-8673.

DuBose, David L.; Robinson, Randall E.; Holovics, Thomas C.; Moody, David R.; Weintrob, Edward C.; Berrie, Cindy L.; Barybin, Mikhail V. Interaction of Mono- and Diisocyanoazulenes with Gold Surfaces: First Examples of Self-Assembled Monolayer Films Involving Azulenic Scaffolds. Langmuir (2006), 22(10), 4599-4606.

Erickson, Elizabeth S.; Mooren, Olivia L.; Moore, David; Krogmeier, Jeffrey R.; Dunn, Robert C.. The role of nuclear envelope calcium in modifying nuclear pore complex structure. Canadian Journal of Physiology and Pharmacology (2006), 84(3/4), 309-318.

Fogarty, Barbara A.; Lacher, Nathan A.; Lunte, Susan M.. Microchip capillary electrophoresis: application to peptide analysis. Methods in Molecular Biology (Totowa, NJ, United States) (2006), 339(Microchip Capillary Electrophoresis), 159-186.

Frankenfeld, Celeste N.; Rosenbaugh, Matt R.; Fogarty, Barbara A.; Lunte, Susan M.. Separation and detection of peroxynitrite and its metabolites by capillary electrophoresis with UV detection. Journal of Chromatography, A (2006), 1111(2), 147-152.

Gifford, Raeann; Kehoe, Joseph J.; Barnes, Sandra L.; Kornilayev, Boris A.; Alterman, Michail A.; Wilson, George S.. Protein interactions with subcutaneously implanted biosensors. Biomaterials (2006), 27(12), 2587-2598.

Huynh, Bryan H.; Fogarty, Barbara A.; Nandi, Pradyot; Lunte, Susan M.. A microchip electrophoresis device with on-line microdialysis sampling and on-chip sample derivatization by naphthalene 2,3-dicarboxaldehyde/2-mercaptoethanol for amino acid and peptide analysis. Journal of Pharmaceutical and Biomedical Analysis (2006), 42(5), 529-534.

Irungu, Janet; Dalpathado, Dilusha S.; Go, Eden P.; Jiang, Hui; Ha, Hy-Vy; Bousfield, George R.; Desaire, Heather. Method for Characterizing Sulfated Glycoproteins in a Glycosylation Site-Specific Fashion, Using Ion Pairing and Tandem Mass Spectrometry. Analytical Chemistry (2006), 78(4), 1181-1190.

Johnson, Carey K.. Calmodulin, conformational states, and calcium signaling. A single-molecule perspective. Biochemistry (2006), 45(48), 14233-14246.

Johnson, Carey K. , Slaughter, Brian D., Unruh, Jay R., and Price, E. Shane, Fluorescence Probes of Protein Dynamics and Conformations in Freely Diffusing Molecules. Single-Molecule Resonance Energy Transfer and Time-Resolved Fluorescence Methods, in Reviews in Fluorescence, Vol. 3, C. D. Geddes and J. R. Lakowicz, eds., invited book chapter, (Springer, New York, 2006) 239-259.

Johnson, M. A., Rajan, V., Miller, C. E., and Wightman, R. M. Dopamine Release is Severely Compromised in the R6/2 Mouse Model of Huntington’s Disease, J. Neurochem., 2006, 97(3), 737-746.

Kamerzell, Tim J.; Unruh, Jay R.; Johnson, Carey K.; Middaugh, C. Russell. Conformational Flexibility, Hydration and State Parameter Fluctuations of Fibroblast Growth Factor-10: Effects of Ligand Binding. Biochemistry (2006), 45(51), 15288-15300.

Krisko, Ryan M.; McLaughlin, Kieran; Koenigbauer, Michael J.; Lunte, Craig E.. Application of a column selection system and DryLab software for high-performance liquid chromatography method development. Journal of Chromatography, A (2006), 1122(1-2), 186-193.

Li, Michelle W.; Huynh, Bryan H.; Hulvey, Matthew K.; Lunte, Susan M.; Martin, R. Scott. Design and Characterization of Poly(dimethylsiloxane)-Based Valves for Interfacing Continuous-Flow Sampling to Microchip Electrophoresis. Analytical Chemistry (2006), 78(4), 1042-1051.

Mora, Johanna R.; Knoll, Joan H. M.; Rogan, Peter K.; Getts, Robert C.; Wilson, George S.. Dendrimer FISH detection of single-copy intervals in acute promyelocytic leukemia. Molecular and Cellular Probes (2006), 20(2), 114-120.

Moriyama, Kenji; Takaoka, Hiroki; Yasuzawa, Mikito; Wilson, George S.. Development of precise enzyme-localizing technique for multi-channel sensor fabrication. Chemical Sensors (2006), 22(Suppl. B), 10-12.

Pasas, Stephanie; Fogarty, Barbara; Huynh, Bryan; Lacher, Nathan; Carlson, Brian; Martin, Scott; Vandaveer, Walter, IV; Lunte, Susan. Detection on microchips: principles, challenges, hyphenation, and integration. Separation Methods in Microanalytical Systems (2006), 433-497.

Petitto, S. C.; Berrie, C. L.; Langell, M. A. Novel mesoscale defect structure on NiO(100) surfaces by atomic force microscopy. Surface Science (2006), 600(17), L229-L235.

Rodriguez, J. C., Wilks, A., & Rivera, M., Backbone NMR Assignments and H/D Exchange Studies on the Ferric Azide- and Cyanide-Inhibited Forms of Pseudomonas aeruginosa Heme Oxygenase, Biochemistry , (2006), 45(14), 4578-4592

Samra, Hardeep S.; Gao, Fei; He, Feng; Hoang, Etter; Chen, Zugen; Gegenheimer, Peter A.; Berrie, Cindy L.; Richter, Mark L. Structural Analysis of the Regulatory Dithiol-containing Domain of the Chloroplast ATP Synthase  Subunit. Journal of Biological Chemistry (2006), 281(41), 31041-31049.

Schonhoff, C. M., Matsuoka, M., Tummala, H., Johnson, M. A., Estevez, A., Kamaid, A., Ricart, K., Hashimoto, Y., Gaston, B., Macdonald, T. L., Xu, Z., and Mannick, J. B. Aberrant Denitrosylation in Amyotrophic Lateral Sclerosis, Proc. Nat. Acad. Sci.(USA), (2006), 103(7), 2404-2409.

Takaoka, Hiroki; Moriyama, Kenji; Yamamoto, Miho; Yasuzawa, Mikito; Imai, Shinji; Gifford, Raeann; Wilson, George S.. Preparation of in vivo measurement type biosensor using super-flexible alloy wire as the core material. Chemical Sensors (2006), 22(Suppl. B), 7-9.

Takaoka, Hiroki; Yasuzawa, Mikito; Shimizu, Toshiyasu; Imai, Shinji; Gifford, Raeann; Wilson, George S.. Development of flexible glucose sensor for in vivo measurement. Chemical Sensors (2006), 22(Suppl. A), 112-114.

Unruh, Jay R., Price, E. Shane, Molla, Roque Gagliano, Hui, Rongqing, and Johnson, Carey K., Evaluation of a Femtosecond Fiber Laser for Two-Photon Fluorescence Correlation Spectroscopy, Microscopy Research and Technique (2006) 69 891-893.

Unruh, Jay R. , Price, E. Shane, Molla, Roque Gagliano, Stehno-Bittel, Lisa, Johnson, Carey K.and Hui, Rongqing, Two-Photon Microscopy with Wavelength Switchable Fiber Laser Excitation, Optics Express (2006) 14, 9825-9831.

Vitharana, Samadhi N.; Wilson, George S.. Fractionation of chromosome 15 with an affinity-based approach using magnetic beads. Genomics (2006), 87(1), 158-164.

Wang, Mengmeng; Unruh, Jay R.; Johnson, Carey K.; Kuczera, Krzysztof; Schowen, Richard L.; Borchardt, Ronald T. Effects of Ligand Binding and Oxidation on Hinge-Bending Motions in S-Adenosyl-L-homocysteine Hydrolase. Biochemistry (2006), 45(25), 7778-7786.

Weis, David D.; Engen, John R.; Kass, Ignatius J. Semi-automated data processing of hydrogen exchange mass spectra using HX-Express. Journal of the American Society for Mass Spectrometry (2006), 17(12), 1700-1703.

Weis, David D.; Kjellen, Peter; Sefton, Bartholomew M.; Engen, John R. Altered dynamics in Lck SH3 upon binding to the LBD1 domain of Herpesvirus saimiri Tip. Protein Science (2006), 15(10), 2402-2410.

Weis, David D.; Wales, Thomas E.; Engen, John R.; Hotchko, Matthew; Ten Eyck, Lynn F. Identification and Characterization of EX1 Kinetics in H/D Exchange Mass Spectrometry by Peak Width Analysis. Journal of the American Society for Mass Spectrometry (2006), 17(11), 1498-1509.

Yasuzawa, Mikito; Furukawa, Shinya; Takaoka, Hiroki; Gifford, Raeann; Wilson, George S.. Development of a multichannel biosensor for in vivo measurement. Chemical Sensors (2006), 22(Suppl. A), 115-117.

Yi, Lin; Dratter, Joe; Wang, Chao; Tunge, Jon A.; Desaire, Heather. Identification of sulfation sites of metabolites and prediction of the compounds' biological effects. Analytical and Bioanalytical Chemistry (2006), 386(3), 666-674.

Zhang, Ying; Jiang, Hui; Go, Eden P.; Desaire, Heather. Distinguishing Phosphorylation and Sulfation in Carbohydrates and Glycoproteins Using Ion-Pairing and Mass Spectrometry. Journal of the American Society for Mass Spectrometry (2006), 17(9), 1282-1288.